PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014470.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 176aa    MW: 18443.8 Da    PI: 8.4281
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014470.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.7e-134468125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  CCG014470.1 44 CSGCRNLLLYPVGATSVCCAVCNAV 68
                 ************************9 PP
2zf-LSD146.46.5e-1583107125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  CggC+tlL+Y rGA+sV+C++C+tV
  CCG014470.1  83 CGGCHTLLMYIRGATSVQCSCCHTV 107
                  ************************9 PP
3zf-LSD137.34.4e-12121145125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C +V
  CCG014470.1 121 CGSCRMLLMYRYGARSVKCAVCTFV 145
                  **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-124171IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-104468IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.77E-558126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.2E-1480109IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1283107IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-12118146IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-11121145IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPPAP APAPPPPPPP PLPPANGAQS QLVCSGCRNL LLYPVGATSV  60
CCAVCNAVTA VPPPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN  120
CGSCRMLLMY RYGARSVKCA VCTFVTPVGM AFIGVPYYKP GKTGNYISRY NQMHQI
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322471e-113CU232247.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018590.12e-99PREDICTED: protein LOL1-like
RefseqXP_011018591.12e-99PREDICTED: protein LOL1-like
RefseqXP_011018592.12e-99PREDICTED: protein LOL1-like
RefseqXP_011018593.12e-99PREDICTED: protein LOL1-like
SwissprotQ93ZB11e-73LOL1_ARATH; Protein LOL1
TrEMBLA0A2G5CN711e-80A0A2G5CN71_AQUCA; Uncharacterized protein
TrEMBLA0A3P6FCG52e-80A0A3P6FCG5_BRAOL; Uncharacterized protein
STRINGBo5g087050.11e-80(Brassica oleracea)
STRINGcassava4.1_018557m1e-80(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-58lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]