PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014607.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 159aa MW: 18097.6 Da PI: 7.8263

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014607.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122	3.3e-38	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++lrr+C +dCvlapyfp + p++fa vhk+FGas++++llk+lp + r da++++ eA rardPvyG+vgvi++lqqq+ +++el+++k CCG014607.1 6 RCAACRFLRRRCRQDCVLAPYFPPTYPQRFASVHKVFGASKITELLKQLPVHLRYDAAECMSIEAASRARDPVYGCVGVISQLQQQIIDVQSELVKIK 103 6*********************************************************************************************9988 PP DUF260 99 ee 100 e CCG014607.1 104 GE 105 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.886	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-38	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSNSTRCAAC RFLRRRCRQD CVLAPYFPPT YPQRFASVHK VFGASKITEL LKQLPVHLRY 60 DAAECMSIEA ASRARDPVYG CVGVISQLQQ QIIDVQSELV KIKGELAVHN AQQQLQLENG 120 EKASEQRQDE LLWLGSTQHD PLNLDQLLIQ ANDYQKSHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046521.1	1e-116	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	A0A2K1YZY8	2e-83	A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRING	POPTR_0010s25720.1	2e-68	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-32	LBD family protein