PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014689.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 217aa MW: 24525.6 Da PI: 6.2748

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014689.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	200	9.9e-62	6	171	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 ++f+ ++q+CyvqC+fC+til+vsvP +s++++vtv CGhC+sllsvnl+k + +ll++ sh + +++ ++ ++++ ++ ++++s CCG014689.1 6 HLFDPPDQICYVQCGFCTTILLVSVPCSSSSTLVTVICGHCSSLLSVNLTKIAflpfNLLTSLSH-------DHEQKQMHSPDEVNAQKGLDTQSSFI 96 7899********************************************998444444444444.......22222222222333322222222222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPkihfg 169 v ++ +e+ d+ p +++PPekrqr+Psayn+fi +eei+r+k++nP+++h+eafs+aaknWah P++h++ CCG014689.1 97 VIASDNDEDIDKVNPVNRVINKPPEKRQRAPSAYNCFInREEIRRLKTENPNMAHKEAFSTAAKNWAHCPHVHYK 171 2222225555555555555789************669******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.8E-60	10	171	IPR006780	YABBY protein
SuperFamily	SSF47095	7.33E-6	112	166	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.6E-4	118	166	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MLTLNHLFDP PDQICYVQCG FCTTILLVSV PCSSSSTLVT VICGHCSSLL SVNLTKIAFL 60 PFNLLTSLSH DHEQKQMHSP DEVNAQKGLD TQSSFIVIAS DNDEDIDKVN PVNRVINKPP 120 EKRQRAPSAY NCFINREEIR RLKTENPNMA HKEAFSTAAK NWAHCPHVHY KDDGETNGLE 180 EENSTWSSDA AEVNIESKGF HERKVPRHYM WAKTPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045290.1	1e-160	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	3e-68	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A3N7H7S4	1e-152	A0A3N7H7S4_POPTR; Uncharacterized protein
STRING	POPTR_0010s05220.1	1e-151	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-70	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]