PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014705.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 85aa    MW: 9666.7 Da    PI: 9.6329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014705.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-091458244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +l+ +a +++ ++   +W+ +a+ +g g+++++++ ++
      CCG014705.1 14 SPWTPKQNKLFEKALALYDKDtpdRWHNVAKAVG-GKSAEEVQRHY 58
                     58********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5361166IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.7E-41163IPR009057Homeodomain-like
SMARTSM007171.1E-81264IPR001005SANT/Myb domain
PfamPF002498.6E-81458IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-131470IPR009057Homeodomain-like
CDDcd001672.09E-71558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSNSLNSSR NCSSPWTPKQ NKLFEKALAL YDKDTPDRWH NVAKAVGGKS AEEVQRHYEI  60
LIRDVREIES GRVPFPNYRS SGNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003722.14e-58PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN03e-37RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9MXN33e-54B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.15e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-36RAD-like 6