PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014781.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 156aa    MW: 17817.2 Da    PI: 8.7652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014781.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081356344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++
      CCG014781.1 13 SWTPKQNKLFEKALAVYDKDtpdRWQNVAKAVG-GKSAEEVKMHY 56
                     7********************************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.725660IPR017877Myb-like domain
SMARTSM007176.7E-81062IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-121268IPR009057Homeodomain-like
PfamPF002492.1E-61356IPR001005SANT/Myb domain
CDDcd001678.69E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAYFMSSNGS SSSWTPKQNK LFEKALAVYD KDTPDRWQNV AKAVGGKSAE EVKMHYDRLV  60
EDLTYIESGQ APLPNYKPSG SNSRGLAEEQ RYVMNVSGNQ HTHQLQDKNQ LHCSCMQYCF  120
ILGSLAQRTL FATHLTHVQD MSIRIPIYYP WKLKGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-33692387RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004014.18e-57PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K2BCW91e-48A0A2K2BCW9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03640.13e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-39RAD-like 6