PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014824.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 238aa MW: 25801.3 Da PI: 7.6842

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014824.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.4	8.3e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Ga+g++++++++++q++ae CCG014824.1 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVNPVNGAAGLLWTGNWHVCQAAAE 99 6************************************************************************************************9 PP DUF260 94 lall 97 ++l+ CCG014824.1 100 TVLR 103 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.854	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLFE ACGRTVNPVN GAAGLLWTGN WHVCQAAAET VLRGGTLLPM PELLTGGGGS 120 PSPSSDEASE VEVACTDIWK LQDPNPNHHP RFSISRSRLS PKRKRTEEPV AVKVQHNDLD 180 LGLTPSFSLK GFAYKQEIRR PGTPSMNSAE SVTTNTACFD SAGLGDEGRE TKLLNLFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	PKRKRTE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214283	0.0	AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015565.1	1e-177	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	5e-94	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	U5G4U0	1e-162	U5G4U0_POPTR; LBD family protein
STRING	POPTR_0007s10010.1	1e-163	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-88	LOB domain-containing protein 38