PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015004.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 176aa MW: 19853.2 Da PI: 6.784

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015004.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.2	1.2e-53	31	126	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP akisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala+lGf+dy eplk yl kyre+ege+ CCG015004.1 31 KEQDRLLPIANVGRIMKQILPPSAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALASLGFDDYSEPLKRYLYKYREVEGER 126 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-52	28	143	IPR009072	Histone-fold
SuperFamily	SSF47113	1.02E-40	33	147	IPR009072	Histone-fold
Pfam	PF00808	2.2E-27	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.3E-20	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	6.3E-20	83	101	No hit	No description
PRINTS	PR00615	6.3E-20	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MVDSIGNNNS DKEWLKYDFA GGSTSDDGII KEQDRLLPIA NVGRIMKQIL PPSAKISKEA 60 KETMQECVSE FISFVTGEAS DKCHKEKRKT VNGDDICWAL ASLGFDDYSE PLKRYLYKYR 120 EVEGERASHN KASNNEERDD SSKYRGESIL KATVSPHTPL KLPGNIDRSN SLSRRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-44	30	121	1	92	Transcription factor HapC (Eurofung)
4g92_B	6e-44	30	121	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033579.1	1e-129	PREDICTED: nuclear transcription factor Y subunit B-5
Swissprot	O82248	5e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	B9I9U4	1e-126	B9I9U4_POPTR; Uncharacterized protein
STRING	POPTR_0014s12710.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-61	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]