PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015022.4
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 293aa    MW: 32457.1 Da    PI: 5.7638
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015022.4genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.5e-07751240
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  CCG015022.4  7 QKRLCDYCNDTTALLYCRADSAKLCLSCDHEVHSTnqlfskHTRS 51
                 7899******99*********************668888888875 PP
2zf-B_box23.89.3e-085396542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                  C+ ++  ++++fCe+ ++ +C++C l+ H +       H+++p+
  CCG015022.4 53 LCDVCHTSPVSIFCETEHSVFCQNCDLARH-SlssfpstHNRRPI 96
                 7*****************************.55778888888775 PP
3CCT63.28e-22249290142
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                  R+ a++RYkeK++tR+++K+irYesRK++A+sR R+KGrF+k
  CCG015022.4 249 RDSAISRYKEKKQTRRYDKRIRYESRKVRADSRTRIKGRFAK 290
                  899**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.608653IPR000315B-box-type zinc finger
PfamPF006431.8E-5751IPR000315B-box-type zinc finger
CDDcd000215.01E-7953No hitNo description
PROSITE profilePS5011910.5664996IPR000315B-box-type zinc finger
PfamPF006431.8E-65296IPR000315B-box-type zinc finger
CDDcd000211.64E-65396No hitNo description
SMARTSM003360.0525496IPR000315B-box-type zinc finger
PfamPF062031.9E-16249290IPR010402CCT domain
PROSITE profilePS5101714.783249291IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNPKPQQKRL CDYCNDTTAL LYCRADSAKL CLSCDHEVHS TNQLFSKHTR SLLCDVCHTS  60
PVSIFCETEH SVFCQNCDLA RHSLSSFPST HNRRPIEGFT GCPSGNELME ILGLEDLGLE  120
QSMLFSEETG GFMGSGLDDG YSDLFIWDST AVSIDDFIMS GNSGPNLQAL GAPPLPKENG  180
EAANQASFPS TSPGSNFEES CAVPEAEFKI SDSASHINDS HEAEPQPSSI GKLPVLPNVG  240
THELNSQERD SAISRYKEKK QTRRYDKRIR YESRKVRADS RTRIKGRFAK LDH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033605.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_011033606.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_011033607.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822566e-77COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3N7FYS70.0A0A3N7FYS7_POPTR; Uncharacterized protein
STRINGPOPTR_0020s00320.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-79B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]