PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015288.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 530aa MW: 58083 Da PI: 8.0399

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015288.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H CCG015288.1 139 YICEVCHKGFQRDQNLQLHRRGH 161 89*******************88 PP
2	zf-C2H2	13	0.00031	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + CCG015288.1 215 WKCDKCSKRYAVQSDWKAHAKIC 237 58*****************9987 PP
3	zf-C2H2	10.8	0.0016	245	263	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + CCG015288.1 245 DCGTIFSRKDSFVTHRAFC 263 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.54E-6	138	161	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-5	138	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	139	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	180	210	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-4	203	236	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-6	210	235	No hit	No description
SMART	SM00355	140	215	235	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MEEEDQRTSK MSNFVQEFED DEQFQSAGDS QHSIGSPNPT ENGGSTPTTS TTSKKKRNLP 60 GNPGKKNLFI LLPKCHGYVQ DNNIFIPKCL TGFKENIHDN QHKNLTRDNL VNNVEVHSFD 120 PDAEVVALSP RTLMATNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR QNTQAKKRVY 180 VCPEPTCVHN DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR 240 EYRCDCGTIF SRKDSFVTHR AFCDALAEEN YKVNQNLAAT GGMLQEQEPF SSSMPSSDAC 300 TNKSAAMNLT ISAVNSDSAL RPLSLNSSGM VMSSNLNPRT SLPLACFSSL DGSNTSPLAV 360 GSSYTSATAL LQKAAVMGAK ISDNSIAPIL FKGFNGYSTT SMNSSGSVPE GSSIDGSNKG 420 PHAANMNGIY LGDTGMFDKN LDPGYPRNSV CQTGFFESPL LMDIENGNAA HALVGEGYMG 480 GSEKMTVDFL GVEPPTGHSA VGRKRNYEGN IMGLGYPNAQ QNLHNLHSDW

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MEEEDQRTSK MSNFVQEFED DEQFQSAGDS QHSIGSPNPT ENGGSTPTTS TTSKKKRNLP  60
GNPGKKNLFI LLPKCHGYVQ DNNIFIPKCL TGFKENIHDN QHKNLTRDNL VNNVEVHSFD  120
PDAEVVALSP RTLMATNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR QNTQAKKRVY  180
VCPEPTCVHN DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR  240
EYRCDCGTIF SRKDSFVTHR AFCDALAEEN YKVNQNLAAT GGMLQEQEPF SSSMPSSDAC  300
TNKSAAMNLT ISAVNSDSAL RPLSLNSSGM VMSSNLNPRT SLPLACFSSL DGSNTSPLAV  360
GSSYTSATAL LQKAAVMGAK ISDNSIAPIL FKGFNGYSTT SMNSSGSVPE GSSIDGSNKG  420
PHAANMNGIY LGDTGMFDKN LDPGYPRNSV CQTGFFESPL LMDIENGNAA HALVGEGYMG  480
GSEKMTVDFL GVEPPTGHSA VGRKRNYEGN IMGLGYPNAQ QNLHNLHSDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-33	211	274	3	66	Zinc finger protein JACKDAW
5b3h_F	4e-33	211	274	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004342.1	0.0	PREDICTED: zinc finger protein JACKDAW-like
Swissprot	Q9SCQ6	1e-102	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3N7FEG2	0.0	A0A3N7FEG2_POPTR; Uncharacterized protein
STRING	POPTR_0001s12770.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17040	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]