PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015306.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 337aa    MW: 36029.9 Da    PI: 5.5888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015306.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182171256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  CCG015306.1 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 71
                 689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.312178IPR001471AP2/ERF domain
PfamPF008472.4E-122170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-282178IPR001471AP2/ERF domain
CDDcd000181.88E-162178No hitNo description
SMARTSM003805.5E-342184IPR001471AP2/ERF domain
PRINTSPR003671.1E-72233IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-202279IPR016177DNA-binding domain
PRINTSPR003671.1E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGAPSGGLRG RRKSSTRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA  60
YDDAARALRG AHARTNFELP QLAPNSGPGG RASLSEVEPF SFEDVCGTGT EAEGILGALK  120
AKLLDGKGLR VLPSANCSSS VQPDMIANIS HKNNISKREL ASTASITDGV GTVIAIQDPG  180
SSGSGKGDLV LDLDHGDMMA GHVAAAQWSQ PCQTTATANM EWPSEPASYE VSWATQMNHI  240
YDQAALFTSS STIATSAWPL SATTQPSFDS TYPYPCATEL FMNKISRTTT TNTPSPQIDG  300
PTEGVWSDEQ QFLHCDNSGW TGANSSSWDP FLSYPQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1419771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004420.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
TrEMBLB9I0P30.0B9I0P3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-15related to AP2 11