PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015465.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 265aa    MW: 30143.2 Da    PI: 10.2035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015465.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-095089647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +eE+ l   + +++G++ WktIa++++ gRt+  +  +w  +
      CCG015465.1 50 PEEQTLVMSLQAKYGNK-WKTIASEVP-GRTARRLNKWWEVF 89
                     79***************.*********.****9888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-104088IPR009057Homeodomain-like
PROSITE profilePS5129416.1274094IPR017930Myb domain
SMARTSM007179.2E-54492IPR001005SANT/Myb domain
CDDcd001673.31E-45090No hitNo description
SuperFamilySSF466895.15E-75094IPR009057Homeodomain-like
PfamPF002496.3E-75086IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLNNMVQKNG TSSLNAWKLV AKPSTETQNP ALNAGKTTSN QASKKGSLIP EEQTLVMSLQ  60
AKYGNKWKTI ASEVPGRTAR RLNKWWEVFK ERQSKSKSKS LLHHHHCTEY SKQNHQLEGN  120
IPFTGDKTSG QGNYDHILET FAEKYVQPKI FNQFQPFTTS LSTMIPPMPE PYPVLSLRGL  180
EQQLESEKAR RRREKAKEIE AKIRCLREEE VSYTSMIESK HKEQLSTWRG DAVSKEAKLV  240
EAWCSEHAKF VKRAGVHFGG GAARD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131530.0AC213153.1 Populus trichocarpa clone POP047-O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305284.12e-88transcription factor AS1
TrEMBLB9H3Q24e-87B9H3Q2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s10250.17e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.14e-23MYB family protein