PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015521.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 427aa MW: 47575.5 Da PI: 7.0122

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015521.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHer +eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl CCG015521.1 46 KPRLKWTPDLHERVIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.885	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-30	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-21	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	154	200	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MYHHHQHQGK SIHSSSRMAI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERVI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQATI GSSKIGTVAV 120 VGDRMPEANA THININNLSI GSQPNKILKS RSLHFSEALQ MQIEVQRRLH EQLEVQRHLQ 180 LRIEAQGKYL QAVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSTQCL NSTFSELNDL 240 QGLCPQQTPP TQPNDCSMDS CLTSCEGSQK EQEIHNTGMG LRPCNSNAFV EPKEITEEHA 300 LQQTELKWGE YLRENKMFLT SIGHETERRT FSAERSCSDL SIGVGLQGEK GNISSSFAEG 360 RFKGMSEDDS FQDQTNKRDD SVKFENEKMS PGYRLSYFTT KLDLNSHEEI DAASSCKQLD 420 LNGFSWN

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MYHHHQHQGK SIHSSSRMAI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERVI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQATI GSSKIGTVAV  120
VGDRMPEANA THININNLSI GSQPNKILKS RSLHFSEALQ MQIEVQRRLH EQLEVQRHLQ  180
LRIEAQGKYL QAVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSTQCL NSTFSELNDL  240
QGLCPQQTPP TQPNDCSMDS CLTSCEGSQK EQEIHNTGMG LRPCNSNAFV EPKEITEEHA  300
LQQTELKWGE YLRENKMFLT SIGHETERRT FSAERSCSDL SIGVGLQGEK GNISSSFAEG  360
RFKGMSEDDS FQDQTNKRDD SVKFENEKMS PGYRLSYFTT KLDLNSHEEI DAASSCKQLD  420
LNGFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034346.1	0.0	PREDICTED: uncharacterized protein LOC105132500 isoform X1
Swissprot	Q9SQQ9	1e-157	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2K1Y1P4	0.0	A0A2K1Y1P4_POPTR; Uncharacterized protein
STRING	POPTR_0013s05670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-160	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]