PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015551.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 304aa    MW: 34136.3 Da    PI: 8.0042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015551.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-172774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
      CCG015551.1 27 KGPWTPEEDEILANYIKKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 74
                     79******************************99************97 PP
2Myb_DNA-binding47.83.4e-1580125148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      CCG015551.1  80 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                      566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-221876IPR009057Homeodomain-like
PROSITE profilePS5129416.6892274IPR017930Myb domain
SuperFamilySSF466891.15E-2924121IPR009057Homeodomain-like
SMARTSM007171.3E-122676IPR001005SANT/Myb domain
PfamPF002494.5E-152774IPR001005SANT/Myb domain
CDDcd001671.63E-102974No hitNo description
PROSITE profilePS5129424.90875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2477130IPR009057Homeodomain-like
SMARTSM007172.7E-1479127IPR001005SANT/Myb domain
PfamPF002496.2E-1481125IPR001005SANT/Myb domain
CDDcd001674.33E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRNLSSRNST RSMSTPTPCC GKVGIKKGPW TPEEDEILAN YIKKDGEGRW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSVKR GPIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLCPNPNSSE IAKIAPIQNS NLNSFPLEAN GWVYRATATG  180
ENENCTMTNL DQFPNQLIDD GAKNWPNCDG FNKGLQSHHE QNNKEDYIGN ENEDTFSLFL  240
DSLINENVFA YQQQQQCNII GPSGQPVISS SQAFHHGSIW EAEVTSSMAA FGEKDGALNS  300
KDLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25271297108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034394.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388503e-78MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9I5W50.0B9I5W5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]