PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015602.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 445aa    MW: 48096.6 Da    PI: 6.1383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015602.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.61.6e-115834423374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l+ a  lL ++ e++sp g++ +R+ +yf+ AL+ar+++s  ++y+ l +++ ++++s++ ++al+ ++ +sP++kfsh+taNq
  CCG015602.1  83 GLLLQCAECVAMDNLNDAMDLLPEIAEISSPFGSSPERVGSYFAHALQARVVSSILGTYSPLVSKSVTRTQSQKLFNALQSYNSISPLVKFSHFTANQ 180
                  58************************************************************************************************ PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +   l++L v+p
  CCG015602.1 181 AIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPSKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGKIGNVTGLSQLGVRP 274
                  *************************************************....9**************************86666666789******* PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +Ea++V++++  h l+d ++s       +Lkl+  l+Pk++  veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE++l+grei+n
  CCG015602.1 275 REAIVVHWMH--HCLYDVTGSDLG----TLKLLALLRPKLIMTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGVDSVERHMVEQQLFGREIRN 365
                  *********9..888888888888....**********************.789******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +va  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  CCG015602.1 366 IVAVGGPKRTGEVK-VERWGDELRRAGFRPVSLQGNPAAQAGLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 442
                  ********998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.75955422IPR005202Transcription factor GRAS
PfamPF035145.4E-11383442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLQSLIPQSP INSTNPNNSS SSPMKSKRAA ADVTVGESSG DDPSSKRVSY ENPTTEVVSS  60
TILVEGGGGG DDGGESSGLR LLGLLLQCAE CVAMDNLNDA MDLLPEIAEI SSPFGSSPER  120
VGSYFAHALQ ARVVSSILGT YSPLVSKSVT RTQSQKLFNA LQSYNSISPL VKFSHFTANQ  180
AIFQALDGED RVHVIDLDIM QGLQWPGLFH ILASRPSKIR SMRITGFGSS SELLESTGRR  240
LADFASSLGL PFEFHPLEGK IGNVTGLSQL GVRPREAIVV HWMHHCLYDV TGSDLGTLKL  300
LALLRPKLIM TVEQDLSHGG SFLGRFVEAL HYYSALFDAL GDGLGVDSVE RHMVEQQLFG  360
REIRNIVAVG GPKRTGEVKV ERWGDELRRA GFRPVSLQGN PAAQAGLLLG MFPWKGYTLV  420
EENGCLKLGW KDLSLLTASA WQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1628744325380Protein SCARECROW
5b3h_A1e-1628744324379Protein SCARECROW
5b3h_D1e-1628744324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004461.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLB9HD660.0B9HD66_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]