PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015720.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 258aa    MW: 28639.9 Da    PI: 10.3428
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015720.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.7e-171050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i ++s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  CCG015720.1 10 FIVSDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                 78899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.049149IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-24295IPR002100Transcription factor, MADS-box
CDDcd002662.47E-21285No hitNo description
PRINTSPR004042.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTRKKVKLAF IVSDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YASQPEVWPS  60
PLGVQRVLSK FKTMPEMEQS KKMVNQESFL RQRIAKASEQ LRKQRKENRE KEVTQAMFLC  120
LTGKINLANL NMIDLNDLGW MIDRNLKDVE NRVESLNKRS RSSTGGASHT SQLAAVAATG  180
AGPTNAGQQA PESSQKADVL AATNLGVNAD SMLRQQWFMD MVTPQETAMG FGGDDNMMLP  240
FGDTNHNALF SNPFFPLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVSDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039051.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-69AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF690.0U5GF69_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00420.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-72AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]