PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015828.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 466aa    MW: 51737.6 Da    PI: 6.6755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015828.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18285333355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+Wv eIr p++   r+r++lg+f taeeAa a++ a+  l+g
  CCG015828.1 285 FRGVRQRH-WGKWVTEIRLPRN---RTRVWLGTFNTAEEAAIAYDTAAYMLRG 333
                  8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-29283343No hitNo description
Gene3DG3DSA:3.30.730.102.2E-30284342IPR001471AP2/ERF domain
SMARTSM003803.7E-33284347IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21284342IPR016177DNA-binding domain
PROSITE profilePS5103221.72284341IPR001471AP2/ERF domain
PRINTSPR003672.6E-10285296IPR001471AP2/ERF domain
PfamPF008476.7E-12285333IPR001471AP2/ERF domain
PRINTSPR003672.6E-10307323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEDQFPKMET FMHTELAAHS SFHGMATGSR YFGDPTIWGA LAGATCHVDD GNNGTKSPSQ  60
SSPERLFSSS ESSSSADVLV SGTNLVGNIP GFGRQDYSKQ NHESCFMSGL YSINSPGGSI  120
SDHIVKESSI NPVNFSEYCP ALNNQAQVSE PPSPSSLSNT SKFPNLTLFF QEPEAFIQTS  180
FQTTWQGSKP KQAVGQLGKD QRCEPMSLFP NTSFSMPQLG QIHFQPSNDW LKINQTMANY  240
SINGFNDYWL RTTTTQPMKY TGRRLQNQHQ KLSFSSASTS PGKLFRGVRQ RHWGKWVTEI  300
RLPRNRTRVW LGTFNTAEEA AIAYDTAAYM LRGDYAHLNF PDLKHQLKAN SLNGTTASLL  360
EAKLQLAISQ GNNISVQKKH SDDLPPTSPD KIIHDTNATK PKGLSQNTAR EELQFELEGK  420
TGCHEVIHEN QKCQEFVASD AEAVQLSRMP SLDMDMIWDS LLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19280351168ATERF1
3gcc_A1e-19280351168ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559450.0EF155945.1 Populus trichocarpa RAP2.4-like protein (RAP2L4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045650.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2K2C6P90.0A0A2K2C6P9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-56ERF family protein