PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015866.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 112aa    MW: 12360.9 Da    PI: 4.581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015866.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54.1e-125480127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  CCG015866.1 54 PGEPDCSYYIRTGLCRFGPTCRFNHPP 80
                 5799*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.845381IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55380IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45979IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDFDAGIPMS RGVGGLPAVT EETSLSPSLS EDAIWQMNLR SSETMEAGPY PERPGEPDCS  60
YYIRTGLCRF GPTCRFNHPP NRKLAIAAAR MKGEFPERIG QPECQGPEKL EE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164704e-77AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015733.11e-73PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX73e-45C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2K1WQ171e-66A0A2K1WQ17_POPTR; Uncharacterized protein
STRINGPOPTR_0019s08040.18e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1922834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-43zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]