PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015880.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 256aa MW: 29313.6 Da PI: 6.1717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015880.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133	2.2e-41	2	135	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy ++Pw+Lp+ ++++ +e++fF++r++++a+g r++r t++gyWkatg+ +v CCG015880.1 2 PGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPQfsgdLCHGDPEECFFFIPRQESEAHGGRPKRLTATGYWKATGSPGSV 99 9********************9977744434449999*******65675444567799******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+ CCG015880.1 100 YSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 135 9855666**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.369	1	164	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-45	2	164	IPR003441	NAC domain
Pfam	PF02365	2.2E-21	2	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MPGFRFYPTE EELVSFYLRN KLEARREDLL RVMDRLIPVL DIYGFNPWEL PQFSGDLCHG 60 DPEECFFFIP RQESEAHGGR PKRLTATGYW KATGSPGSVY SSKSNRCIGE KRTMVFYNGR 120 APNGQKTDWK MNEYKAIKEE EASSSSGAYP KLREEFSLCR VYKKSNFVRA FDRRPLGVEN 180 MVQMRAQAAP ADGATAFHRS PSSGEITCSH DSSTSGHHGQ PFQTGEISDM AIDNEPIWEW 240 EQLDQYWSQQ GHSDQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-31	2	166	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-31	2	166	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-31	2	166	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-31	2	166	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-31	2	166	22	170	NAC domain-containing protein 19
3swm_B	5e-31	2	166	22	170	NAC domain-containing protein 19
3swm_C	5e-31	2	166	22	170	NAC domain-containing protein 19
3swm_D	5e-31	2	166	22	170	NAC domain-containing protein 19
3swp_A	5e-31	2	166	22	170	NAC domain-containing protein 19
3swp_B	5e-31	2	166	22	170	NAC domain-containing protein 19
3swp_C	5e-31	2	166	22	170	NAC domain-containing protein 19
3swp_D	5e-31	2	166	22	170	NAC domain-containing protein 19
4dul_A	5e-31	2	166	19	167	NAC domain-containing protein 19
4dul_B	5e-31	2	166	19	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216672	5e-75	AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004698.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-76	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K1XCD1	0.0	A0A2K1XCD1_POPTR; Uncharacterized protein
STRING	POPTR_0016s07680.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-77	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]