PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015881.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 254aa MW: 28670.8 Da PI: 6.1635

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015881.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.2	2.1e-42	4	137	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppG+rF Pt+eel+++yL++k++g + ++++i+ diy+++PwdLp+ ++ ++ ++w+fF++r++++a+g r++r t++gyWkatg+ CCG015881.1 4 PPGYRFFPTEEELISFYLHHKLDGGSedlnQVINQIIPVRDIYEHDPWDLPQfsgglHHIKDPEQWFFFIPRQESEARGGRPKRLTNTGYWKATGSPG 101 9*********************9955533333457777*******6577753334567****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s +++ +glk+t+vfy+grap+g+kt+W m+ey+ CCG015881.1 102 CVFS-NNRSIGLKRTMVFYSGRAPNGRKTEWKMNEYK 137 .9999*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-46	2	165	IPR003441	NAC domain
PROSITE profile	PS51005	46.837	3	166	IPR003441	NAC domain
Pfam	PF02365	8.9E-22	4	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVFPPGYRFF PTEEELISFY LHHKLDGGSE DLNQVINQII PVRDIYEHDP WDLPQFSGGL 60 HHIKDPEQWF FFIPRQESEA RGGRPKRLTN TGYWKATGSP GCVFSNNRSI GLKRTMVFYS 120 GRAPNGRKTE WKMNEYKALD QGKASSSTSA NPKLRHEYSL CRVYKNSKCV RAFDRRPVGL 180 EVIEPRTQPA SGGNELVASD QNHPTVENTS SPDNSCSGDQ GNPSGTGESS SMPMPIDNDM 240 WDVDLDWYYG AGQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	1	166	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	1	166	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	1	166	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	1	166	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	1	166	18	168	NAC domain-containing protein 19
3swm_B	1e-34	1	166	18	168	NAC domain-containing protein 19
3swm_C	1e-34	1	166	18	168	NAC domain-containing protein 19
3swm_D	1e-34	1	166	18	168	NAC domain-containing protein 19
3swp_A	1e-34	1	166	18	168	NAC domain-containing protein 19
3swp_B	1e-34	1	166	18	168	NAC domain-containing protein 19
3swp_C	1e-34	1	166	18	168	NAC domain-containing protein 19
3swp_D	1e-34	1	166	18	168	NAC domain-containing protein 19
4dul_A	1e-34	1	166	15	165	NAC domain-containing protein 19
4dul_B	1e-34	1	166	15	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004699.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	7e-67	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	B9IIS2	0.0	B9IIS2_POPTR; Uncharacterized protein
STRING	POPTR_0016s07690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-69	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]