PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015992.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 250aa MW: 27759.8 Da PI: 4.8642

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015992.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	8.9e-19	59	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g CCG015992.1 59 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 109 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.7E-13	59	109	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-21	60	118	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-31	60	118	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-35	60	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.209	60	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-10	61	72	IPR001471	AP2/ERF domain
CDD	cd00018	2.48E-32	61	119	No hit	No description
PRINTS	PR00367	2.6E-10	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSDHHQQNSE TESSSTNSLS PASPSSPLSN STQSKKPLQD QDFSPSKKIK RIRDSNKHPV 60 YRGVRMRNWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGN PAILNFPELA 120 NYLPRPASLA PRDVQAAAAK AAQMDKFDQK SETATTTSPS SSSTSSLTSL VSLMDLSSQE 180 EELCEIVELP SLETSYDELS NDFVYFDSID EWMYPPPWMQ SMENHCCGGG GGCACDDFTL 240 PNESTVLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	58	121	12	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155925	0.0	EF155925.1 Populus trichocarpa TINY-like protein (TINYL6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004731.1	0.0	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-75	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A9PL75	0.0	A9PL75_POPTR; TINY-like protein
STRING	POPTR_0018s00270.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-65	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]