PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016265.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 269aa    MW: 29907.4 Da    PI: 9.2557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016265.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+
  CCG016265.1 11 ICNDSARKATFKKRKKGLMKKVSELSTLCGVDACAIVYSP 50
                 789************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.82149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.33E-23285No hitNo description
SuperFamilySSF554551.44E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTRKKVKLAY ICNDSARKAT FKKRKKGLMK KVSELSTLCG VDACAIVYSP YDSQPEVWPS  60
PLGVQRVVTK FKSMPEIEQG KKMVNQESFL RQRITKSCDQ IKKQRKDNRE KEVTHAMFQC  120
LSGNISLGNL HMMDLNDLGW VIDHSLKDIN MTLNNGSGRG GGHXXXXXXX XXXINRPQNN  180
GSGSGTSHTS QLEAAAATGA GPSSAREQAP ESSQMVTNDF EVNVGAMQRQ QWFMDLMTPQ  240
EHMGFGGEDM VLPSGDNNQN GLWTNSFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYICNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145960.0AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023893.11e-171PREDICTED: agamous-like MADS-box protein AGL80 isoform X2
SwissprotQ9FJK39e-67AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2K1XYN51e-163A0A2K1XYN5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s00350.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]