PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016355.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1392aa    MW: 153313 Da    PI: 4.9181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016355.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05641664123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C++C+ +F  +++L +H+ + H
  CCG016355.1 641 YECHKCTLTFDEQDDLLQHLLSsH 664
                  99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR009291.1E-8193203IPR017956AT hook, DNA-binding motif
SMARTSM003840.54193205IPR017956AT hook, DNA-binding motif
PfamPF021780.13193203IPR017956AT hook, DNA-binding motif
PRINTSPR009291.1E-8299310IPR017956AT hook, DNA-binding motif
SMARTSM003840.54301313IPR017956AT hook, DNA-binding motif
PfamPF021780.13301311IPR017956AT hook, DNA-binding motif
PRINTSPR009291.1E-8407417IPR017956AT hook, DNA-binding motif
SMARTSM003840.54409421IPR017956AT hook, DNA-binding motif
PfamPF021780.13409419IPR017956AT hook, DNA-binding motif
PROSITE profilePS5098210.469515588IPR001739Methyl-CpG DNA binding
SuperFamilySSF541713.92E-7521581IPR016177DNA-binding domain
PfamPF014291.1E-4524581IPR001739Methyl-CpG DNA binding
SMARTSM003550.034641664IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328641669IPR007087Zinc finger, C2H2
PROSITE patternPS000280643664IPR007087Zinc finger, C2H2
SMARTSM003555.4688710IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12688715IPR007087Zinc finger, C2H2
PROSITE patternPS000280690710IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1392 aa     Download sequence    Send to blast
MATATVDASV CNYQNQVHTE SLLLIDLRHL SQPELLSLSF CSSSSSLHRL QTDTADVSTP  60
KIDRSVFNES AGSRKQTFSR LRLAPRNNNA SSSSNSTPVV PFQITERNPL DEENSQIIYL  120
LKSLFGSNSH FIESNNENNH NLVSVPVIYN EYMRLPCTNN AELQNVGCSQ GGVKSLEVNH  180
LISTRIAESS SKKRKRGRPR KNENVDFGNN ELLERKKIEN KTIAVVCDDV EVQNKKTEEM  240
EMVSKNGVVV DFLALGNMED PYGQELRRRT EGMLGLSQGG VKSLEVNHLI STGIAESSSK  300
KRKRGRPRKN ENVDFGNNEL LERKKIENKT IAVVCDDVEE QNKKTEEMEM VSKNGVIVDF  360
VALGNMEDPY GEELRRRTEG MLGFSQGGVK SLEVNHLIST GIAESSSKKR KRGRPRKNEN  420
VDLGNNELVE RKKIENKTIA VVCDDVEVQN KKKEEMEMVS KNGVIVDCVA LGNMEDPYGE  480
ELRRRTEGMQ LKAEFLGFLE GFEGEWGSTR KKRRIVDASL FGDALPIGWK LSICVKKQAG  540
RVWLACTRYI SPNGLPFVSC KEVSSYLLSF SGLHDARQLN FDHMDGRIKL TDKIAASISA  600
DQTCKDGKIE NDFVSYKALP VISTSIETGG CPRDVQTGMN YECHKCTLTF DEQDDLLQHL  660
LSSHQRSPKQ LKCGTSTNEE VIIKNGKYEC QFCLKLFEER HHFNGHLGNH AKDHFKKLDA  720
SSDVTTQKND EPTSVEIPVG AVKIQTSIDI DRDSDEITSD TKTNGAINST IPSWEMKANT  780
SVKAYCGKQD RVSNISNDEM GKMNEVTGIS AEISVCSEPA LLSNENNAIH RSSDEANVPR  840
YCTNIVDELD CSVAGDVRNL ACINLNQFPP RLIEELNQER GSDSGLLAPN AKENMFNDDI  900
IEDRNCSSTI DNMVIDDWDT DGKGEPATGS CAAIAENVAA NLKEQRSSEG CSVGHLNSNA  960
VETMQEKGSK GDLTGIENKG GLLTISGNEQ SFDLKGNVIK VSKGTINVVN QNEVLCLKNN  1020
EFGSEIDQSV QTVTNIKQER SSNIFSFFPS TNGLTFPSKD YGMCNSTLEK LSQGRNSGNG  1080
PSHNEQSHDD ESSVNRLSCS TLAEDKLQEA KTSCNGELCI AFGDNGTEQD ADIVTGTVQE  1140
ICFLFAGNQH TLAAKDNATG PFNGTMDELK QKMDSVESVL CLSGDAPMRS VEKNMHAAFT  1200
GSIQDEPSVK HTENSKKDDL GHDFSGHPGP SESVVSEFMW RNDEEKGLRC DFADTCQPVQ  1260
ASGFFPLYDA VSDKGESELY GETYGVISGF GGSKSGGMEN MEYNVLNSQV SSHSDESKAV  1320
SCDAVMPQGF DSSVCLEKGD LPFLAKNASR HHVPAVCVWC GREICQEDFE SEAQTSTMGF  1380
MCAECTARFS GH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004791.10.0PREDICTED: uncharacterized protein LOC105111196 isoform X1
TrEMBLA0A3N7F4P10.0A0A3N7F4P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17160.10.0(Populus trichocarpa)