PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016504.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 142aa    MW: 16517.5 Da    PI: 11.1124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016504.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.3e-1528112387
                  EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  k+l    + +++rl++p +f+++      g      +t   +de+g+ W +++++rk+++    +lt+GW  Fvk+++L++gD v F   +r
  CCG016504.1  28 KIL--RKTDTEKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGKAWPFQCSIRKRGQYpkPFLTRGWVAFVKSKKLRVGDKVRFI--KR 112
                  555..44556678*********99998532...2457888999**********99888888889*********************998..22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.03824128IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-1525117IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-1826109No hitNo description
SMARTSM010191.1E-826124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1826117IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-1328116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MESSHEHEEI SFALLLLLLV LEMTNFWKIL RKTDTEKRLS VPIRFLRSLP PFKLGSHAVT  60
FEATDEKGKA WPFQCSIRKR GQYPKPFLTR GWVAFVKSKK LRVGDKVRFI KRENRATATI  120
SYKVRAEKAI KIFGATFGYA RI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-175AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003893.11e-100PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A3N7FZW21e-70A0A3N7FZW2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01840.17e-69(Populus trichocarpa)
STRINGPOPTR_0015s01900.19e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.12e-09auxin response factor 22