PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016506.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13662.2 Da    PI: 11.2342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016506.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-17594290
                 EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                  k+l    + +++rl++p +f+++      g      +t   +de+g+ W+++++ rk+++    vlt+GW  Fvk+++L++gD v+F  ++++++
  CCG016506.1  5 SKIL--RETDTKKRLSVPIRFLRSLppfklG---SHAVTFDATDEKGKAWTFQCSTRKRGQYpkPVLTRGWVAFVKSKKLQVGDKVMFI-KRENCA 94
                 5666..55667778*********99998532...256799999***********87777776889***********************8.222444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.9112106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-15396IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.5E-84102IPR003340B3 DNA binding domain
CDDcd100171.09E-19487No hitNo description
PfamPF023623.2E-14696IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAVFSKILRE TDTKKRLSVP IRFLRSLPPF KLGSHAVTFD ATDEKGKAWT FQCSTRKRGQ  60
YPKPVLTRGW VAFVKSKKLQ VGDKVMFIKR ENCATATISY KVRAEKAIKI FGATFGYARI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-146AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003894.11e-83PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU92e-68B9IDU9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01840.12e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.11e-10auxin response factor 22