PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016540.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 314aa    MW: 35167 Da    PI: 5.3155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016540.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1882130355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++ ++g
  CCG016540.1  82 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARIIRG 130
                  9*******.**********954...4*******************99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-3281139IPR001471AP2/ERF domain
PROSITE profilePS5103223.16981138IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2281139IPR016177DNA-binding domain
SMARTSM003801.0E-3781144IPR001471AP2/ERF domain
PRINTSPR003678.3E-128293IPR001471AP2/ERF domain
CDDcd000183.22E-3282139No hitNo description
PfamPF008471.2E-1182123IPR001471AP2/ERF domain
PRINTSPR003678.3E-12104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCGGAILADI IPRNRGRREA ASQFWPNSCF DKLGPFESSL SQASNQEESF TLKRPQPQPA  60
SETGGLEQVE KPNAKRQRKN LYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA  120
YDREARIIRG KKAKVNFPNE DEHYSSSQNS TTKPPMYQNP TCHFSKGYDF GYGSGMNQVR  180
SYSSNGFNGQ PIVASGEDDS GSASEEVTRL VGCNQNVKSN IYMGQVKLEV EEKQEKVNNK  240
EVVVVDLGTG EEENEVQQLT EELIAYENYM KFYQIPYLDG QSMAPNGSTQ ENLVANLWNF  300
DDVCVAPPVT SAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2182138360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21821401574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015854.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLB9GSD40.0B9GSD4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein