PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016688.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24284.1 Da    PI: 9.3094
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016688.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.5e-211764249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i  ks  qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + +
  CCG016688.1 17 KIAKKSHLQVTFSKRRAGLFKKASELSTLCGVDIAMIVFSPAQKAFSF 64
                 68899999*********************************9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-31867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-25882IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.605868IPR002100Transcription factor, MADS-box
CDDcd002651.24E-31980No hitNo description
PRINTSPR004044.5E-171030IPR002100Transcription factor, MADS-box
PfamPF003195.7E-241764IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVNRKPTMGR QRIKIEKIAK KSHLQVTFSK RRAGLFKKAS ELSTLCGVDI AMIVFSPAQK  60
AFSFGHPSVD SMMLRFLTGS PPPPSSGLHQ LIETRRDANV HEQNMQLTQT LNQLEAEKKK  120
GEVLDQMRKV DRSQCCWEAP IEELELHELE QLRGALEELK KTVAKQVNNI LIQSTSSLPF  180
LAVNGVGEVG NLETKLEIDN ASAALHFNNF GYAQKIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-18894187Myocyte-specific enhancer factor 2B
1tqe_Q8e-18894187Myocyte-specific enhancer factor 2B
1tqe_R8e-18894187Myocyte-specific enhancer factor 2B
1tqe_S8e-18894187Myocyte-specific enhancer factor 2B
6c9l_A8e-18894187Myocyte-specific enhancer factor 2B
6c9l_B8e-18894187Myocyte-specific enhancer factor 2B
6c9l_C8e-18894187Myocyte-specific enhancer factor 2B
6c9l_D8e-18894187Myocyte-specific enhancer factor 2B
6c9l_E8e-18894187Myocyte-specific enhancer factor 2B
6c9l_F8e-18894187Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2157330.0AC215733.1 Populus trichocarpa clone POP051-I21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031765.11e-161PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLB9HLM71e-125B9HLM7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04110.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-38AGAMOUS-like 61