PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016889.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 395aa    MW: 42909.5 Da    PI: 7.0489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016889.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31180238259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  CCG016889.1 180 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 238
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787174240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-31177240IPR003657WRKY domain
SuperFamilySSF1182902.75E-26178240IPR003657WRKY domain
SMARTSM007741.4E-37179239IPR003657WRKY domain
PfamPF031067.9E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRDPLLHELN VAAGSSYFSS QNSADHVLGA TSVDHDHTSS FVGANNAITS SSSSILAHQR  60
VFEDHEIHKA ATPPPAPCNI FSRIQISPNN PPKLPVSPCN SPVIATGSSP RGFKPSAMVS  120
SDIINVNNSK GCLMENTGQV QISSPRNMGI KRRKSQAKKV VCIPAPAAAN SRPGGEVVPS  180
DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP  240
TQRNALAGST RSQPLKSTAA SKSPTGSQSQ KRGNTKEEQK ESSNDTLSPA NIIGGRSTAS  300
ASVKEEFDDI DKQMEMDDTD FSEGFSHSYK PSMPNQSDQD FFAELGEIDA DPLDLLFTQE  360
FNGDELKESK DLDPFSIFDW SGDPNTTFGE AKKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26154241280Disease resistance protein RRS1
5w3x_D6e-26154241280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494240.0AC149424.1 Populus trichocarpa clone Pop1-011N15, complete sequence.
GenBankAC1494250.0AC149425.1 Populus trichocarpa clone Pop1-041F22, complete sequence.
GenBankAC1494260.0AC149426.1 Populus trichocarpa clone Pop1-053A03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005315.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLB9GGH30.0B9GGH3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s46490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.16e-91WRKY DNA-binding protein 14