PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017054.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 181aa    MW: 21330.2 Da    PI: 11.431
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017054.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-071134225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 ++++C+f++++  C++ drC++ H
  CCG017054.1 11 DRVNCPFYFKSLACRHVDRCSRLH 34
                 6899******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.263937IPR000571Zinc finger, CCCH-type
PRINTSPR018487.8E-151534IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.8E-153454IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAASIFGTEK DRVNCPFYFK SLACRHVDRC SRLHTKPSIS RTLLLSNMYR RRDMITPAVD  60
ALGNTIDPRK IQQYFETSVK LPVGNMRRTY VIVVGIARKR NGSHEECSHG GRGSSRRYDD  120
REEYHESRSR RHKSINPGHW RGQRRRKRSP VRERSEERQA KIAQWNQVRE QHENAANKVK  180
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A6e-15377675Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QYH73e-38A0A3L6QYH7_PANMI; Uncharacterized protein
STRINGPOPTR_0009s15180.17e-47(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.11e-22C3H family protein