PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017259.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 244aa    MW: 27131.7 Da    PI: 6.4927
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017259.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.5e-08333434
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                 ++C+ +e+  ++lfC  ++  lC++C ++ H
  CCG017259.1  3 TICDVCESAAAILFCAADEAALCRSCDEKVH 33
                 68**************************998 PP
2zf-B_box24.65.2e-085391337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                  + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  CCG017259.1 53 VPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                 689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.3E-8147IPR000315B-box-type zinc finger
PfamPF006433.8E-6334IPR000315B-box-type zinc finger
CDDcd000211.48E-6345No hitNo description
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PfamPF006439.3E-65485IPR000315B-box-type zinc finger
CDDcd000212.18E-65484No hitNo description
PROSITE profilePS501198.6175696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRTICDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SAVPQCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR MEEQGQQALD  120
HNETRRDQNQ PLKLTARESK QNHRASPVPM VENNTVSEGK MDNNLIDLNA RPQRIHGQNS  180
TNQENHESSS AVPVGSFKRE PEKFDMMDNT VEKLQVSIEV SPLKSNSCVT SICKNALDSK  240
FNCL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1457660.0EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047357.11e-151PREDICTED: B-box zinc finger protein 19 isoform X2
RefseqXP_011047364.11e-151PREDICTED: B-box zinc finger protein 19 isoform X2
RefseqXP_011047372.11e-151PREDICTED: B-box zinc finger protein 19 isoform X3
SwissprotC0SVM51e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3N7FND91e-146A0A3N7FND9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12730.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-86DBB family protein