PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017452.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 266aa    MW: 29409.2 Da    PI: 8.1968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017452.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20131180255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+  ++g
  CCG017452.1 131 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIDFRG 180
                  59*******.**********94....36**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-33131188IPR001471AP2/ERF domain
PROSITE profilePS5103225.211131188IPR001471AP2/ERF domain
SMARTSM003804.6E-38131194IPR001471AP2/ERF domain
PfamPF008472.4E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23131189IPR016177DNA-binding domain
CDDcd000181.41E-35131188No hitNo description
PRINTSPR003673.6E-12132143IPR001471AP2/ERF domain
PRINTSPR003673.6E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQRSPKRPKI SEAPTATLFS PPAAPPLRLT QEQELAVMVA ALKNVVSGTA SMDFSREINI  60
INMPITSSHP QFGSASSSRD GFCNSILPPS SDLDTCSVCK IKGCLGCNFF PPNQEDKMDD  120
KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FNTAEEAARA YDKAAIDFRG  180
PRAKLNFPFP DSGIASFEES KEKQEKQLGI SEKRSEIETE MGKDNEFLDN IVDEELQEWM  240
TMVMDFGNGD SSNSSGTASA AATIGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000462.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2I4KKP21e-156A0A2I4KKP2_POPTR; ERF family protein
STRINGPOPTR_0009s10470.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-32redox responsive transcription factor 1