PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017524.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-PHD

Protein Properties

Length: 934aa MW: 102066 Da PI: 4.6726

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017524.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.8	6.9e-12	844	885	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L ++F++n+yp++++++ LA++lg+t +qV WF N R CCG017524.1 844 VTQRLYSYFKENQYPDRAAKASLAEELGITFEQVNKWFVNAR 885 6899************************************99 PP
2	PHD	38	3.8e-13	473	528	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++++lCdg C++ fH+ Cl ++l +e++p + wlC+ C++k CCG017524.1 473 FCAKCGSkdLNADNDIILCDGaCDRGFHQFCLIPPLLREDIPPDdeGWLCPGCDCK 528 699*987778****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.33E-13	463	531	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	6.3E-13	469	528	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.994	471	528	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.13E-26	473	525	No hit	No description
Pfam	PF00628	1.0E-10	473	528	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.2E-9	473	526	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	474	525	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00389	1.2E-9	833	895	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-12	836	885	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-11	840	889	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-9	843	885	IPR001356	Homeobox domain
CDD	cd00086	3.14E-11	845	885	No hit	No description
PROSITE profile	PS50071	11.774	848	891	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MSEAENMGVS PSQVSSQTKS YSCPAQTKLE NTHEFTAEYN CGGYSKEKHK LESEIIQTEA 60 GDSSTAVLQS GAGETVEPST EDVTNNSFTD LDPPPEDARV ATFDESSRPI LTAIDQKLEP 120 GAISVNAACT HGESSKATDS GILQDEPGNT SAASSSCIAN ETSQASLENL ANNSCTEDVG 180 PPHGDASKGN QIDKSSYPQQ TISGHTLELL SDRACCEPSE ERQKPGSELS ENESTGIDTE 240 LYCGIAIKNS EPLTQLVTKS SPIKHVGLLP GDSIIIPANE QTRPTHDDED KGPDHEHLET 300 PSRVAIGITR RGRPSGKSAS RLSRKIYMLR SLRSSDRVLR SRSQVKPKAP ESSNNSGNVN 360 STGDKKGKRR KKRRGKNIVA DEYSKIRAHL RYLLNRMSYE QSLITAYSGE GWKGLSLEKL 420 KPEKELQRAT SEITRRKVKI RDLFQHIDYL CSEGRFPSSL FDSEGQIDSE DIFCAKCGSK 480 DLNADNDIIL CDGACDRGFH QFCLIPPLLR EDIPPDDEGW LCPGCDCKVD CIDLLNDSQG 540 TNISISDSWE KVFPEAAATV SGQKLDHNFG PSSDDSDDND YDPDGPDIDK KSQEEESSSD 600 ESDFTSASDE FKAPPDGKEY LGLSSDDSED DDYDPDAPVL EEKLKQESSS SDFTSDSEDL 660 SATINSDGLP LEDECHMPIE TRGVSNGRKS KFDGKKMQSL NSELLSMLEP DLCRDESATV 720 SGKRNVDRLD YKKLYDETYG NISTSSDDDY TDTVGPRKRR KNAGDVATVT ANGDASVTEN 780 GMNSKNMNQE LKENKRNPER GTCHNSSFQE TNVSPAKSYV GASLSGSSGK SVRPSAYKKL 840 GEAVTQRLYS YFKENQYPDR AAKASLAEEL GITFEQVNKW FVNARWSFNH SSSTGASKAE 900 SASGKGSCDG QVRDSELKNR KSNKQKTNTP KSGR

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MSEAENMGVS PSQVSSQTKS YSCPAQTKLE NTHEFTAEYN CGGYSKEKHK LESEIIQTEA  60
GDSSTAVLQS GAGETVEPST EDVTNNSFTD LDPPPEDARV ATFDESSRPI LTAIDQKLEP  120
GAISVNAACT HGESSKATDS GILQDEPGNT SAASSSCIAN ETSQASLENL ANNSCTEDVG  180
PPHGDASKGN QIDKSSYPQQ TISGHTLELL SDRACCEPSE ERQKPGSELS ENESTGIDTE  240
LYCGIAIKNS EPLTQLVTKS SPIKHVGLLP GDSIIIPANE QTRPTHDDED KGPDHEHLET  300
PSRVAIGITR RGRPSGKSAS RLSRKIYMLR SLRSSDRVLR SRSQVKPKAP ESSNNSGNVN  360
STGDKKGKRR KKRRGKNIVA DEYSKIRAHL RYLLNRMSYE QSLITAYSGE GWKGLSLEKL  420
KPEKELQRAT SEITRRKVKI RDLFQHIDYL CSEGRFPSSL FDSEGQIDSE DIFCAKCGSK  480
DLNADNDIIL CDGACDRGFH QFCLIPPLLR EDIPPDDEGW LCPGCDCKVD CIDLLNDSQG  540
TNISISDSWE KVFPEAAATV SGQKLDHNFG PSSDDSDDND YDPDGPDIDK KSQEEESSSD  600
ESDFTSASDE FKAPPDGKEY LGLSSDDSED DDYDPDAPVL EEKLKQESSS SDFTSDSEDL  660
SATINSDGLP LEDECHMPIE TRGVSNGRKS KFDGKKMQSL NSELLSMLEP DLCRDESATV  720
SGKRNVDRLD YKKLYDETYG NISTSSDDDY TDTVGPRKRR KNAGDVATVT ANGDASVTEN  780
GMNSKNMNQE LKENKRNPER GTCHNSSFQE TNVSPAKSYV GASLSGSSGK SVRPSAYKKL  840
GEAVTQRLYS YFKENQYPDR AAKASLAEEL GITFEQVNKW FVNARWSFNH SSSTGASKAE  900
SASGKGSCDG QVRDSELKNR KSNKQKTNTP KSGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	372	KKGKRRKKR
2	367	373	KRRKKRR
3	369	376	RKKRRGKN
4	370	375	KKRRGK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU233771	0.0	CU233771.1 Populus EST from severe drought-stressed opposite wood.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001393.1	0.0	PREDICTED: homeobox protein HAT3.1-like
Refseq	XP_011001400.1	0.0	PREDICTED: homeobox protein HAT3.1-like
Refseq	XP_011001405.1	0.0	PREDICTED: homeobox protein HAT3.1-like
TrEMBL	A0A2K1Z5B7	0.0	A0A2K1Z5B7_POPTR; Uncharacterized protein
STRING	POPTR_0009s09600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-89	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain