PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017552.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 207aa MW: 22841 Da PI: 8.2142

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017552.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.5	1.8e-27	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C++dCvl++++ p++q++++ +v+k+FG++ ++++++++p+++ + +++sl++eA r+ +Pv+Gavg++++++++++q+++ CCG017552.1 2 SCNGCRILRKGCSEDCVLRQCIewinsPQAQANATVFVAKFFGRAGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVSGAVGLLRTGNWHVCQKAVM 99 6*********************************************************************************************9887 PP DUF260 94 lal 96 ++l CCG017552.1 100 TVL 102 665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.144	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-24	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSCNGCRILR KGCSEDCVLR QCIEWINSPQ AQANATVFVA KFFGRAGLMS FISSVPKSQG 60 PSLFRSLLFE AVGRTVNPVS GAVGLLRTGN WHVCQKAVMT VLRRGTVEPQ PEPEGRVFGP 120 EFDNVSECDS FRPSADHVSS GSKTLKRKRD VDVAKRGPMR TDLDLSLMYQ RVDTPPEESE 180 TTTLESDSGN NCRFHDGGEP KLLRLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001831.1	1e-152	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SZE8	7e-59	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	B9HMY4	1e-142	B9HMY4_POPTR; Uncharacterized protein
STRING	POPTR_0009s09270.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-60	LOB domain-containing protein 38