PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017599.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23819.3 Da    PI: 9.6545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017599.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.4e-201156348
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 i  k   qvtfskRr+g++KKA+EL++LC++++a+++fs+  k + 
  CCG017599.1 11 IPKKNHLQVTFSKRRAGLFKKASELCTLCGVDIAIVVFSPAHKAFS 56
                 6667778********************************9887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-27180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.268161IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-16323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRQKIKIEK IPKKNHLQVT FSKRRAGLFK KASELCTLCG VDIAIVVFSP AHKAFSFGHP  60
DVDSIMDRFL TRNPPPQSSG THQLIEAHRN ANVREHNMQL TQILNQLEAE KRHSETLNQM  120
RKSSRSQCWW EAPVEELGLQ ELEQLRDALE ELKKRLTKQT NKILIESSNS LPFLPVNGTG  180
QVGNFETKPE ICVASTLPHV NNFGYGHGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18187187MEF2C
5f28_B1e-18187187MEF2C
5f28_C1e-18187187MEF2C
5f28_D1e-18187187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005044.11e-157PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-55AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K1Z4W31e-153A0A2K1Z4W3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s08740.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]