PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017681.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 337aa MW: 37880.6 Da PI: 9.5643

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017681.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.3e-30	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+ kgL +++vkSHLQ+YR+ CCG017681.1 61 PRLRWTPDLHLCFVQAVERLGGHERATPKLVLQLMNFKGLRIADVKSHLQMYRS 114 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-28	57	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.767	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-12	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-21	61	116	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MKPGSDQNSD GLKFDPSGKN NEEGDDESKT KNSGSSSNSI VEECEKASSS GVRPYARSKV 60 PRLRWTPDLH LCFVQAVERL GGHERATPKL VLQLMNFKGL RIADVKSHLQ MYRSKKIDDQ 120 GQVINGMGDL IRSSDKFSHD FWQHSLLPNI DHNHNSNFRC GNVPWSGHGN WITKPSVPDS 180 ITTRRGAGFY SSMAEKISGE KLMQESQDTQ YHKSIYNSES IRSQTSSTIK QPYFVAQLSK 240 RRGEAANKSI SLETKWSFNV EKCNKAKRKV DDLDLTLSLC TKLKGKEVKR SLSWDVEDVG 300 SNLYLSLSST STKECNSITL NMPSKYPKWT STLDLTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-16	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-16	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210342	0.0	AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003744.1	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A2K1Z4C5	0.0	A0A2K1Z4C5_POPTR; Uncharacterized protein
STRING	POPTR_0009s07890.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16555	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-45	G2-like family protein