PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017736.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 143aa    MW: 16106.6 Da    PI: 6.6883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017736.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-192272356
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 y+G+r+++ +g+++AeIrdp++ng   r +lg+++taeeAa+a+++a+ +++g+
  CCG017736.1 22 YRGIRRRP-WGKFAAEIRDPTKNG--GRRWLGTYDTAEEAARAYDRAAFAFRGH 72
                 9*******.***********9998..888**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-302181IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-232180IPR016177DNA-binding domain
PROSITE profilePS5103224.2892179IPR001471AP2/ERF domain
SMARTSM003801.7E-352185IPR001471AP2/ERF domain
CDDcd000183.45E-292280No hitNo description
PRINTSPR003672.9E-102233IPR001471AP2/ERF domain
PfamPF008471.7E-122272IPR001471AP2/ERF domain
PRINTSPR003672.9E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
METHQGEKNT KKQEKGRGEN AYRGIRRRPW GKFAAEIRDP TKNGGRRWLG TYDTAEEAAR  60
AYDRAAFAFR GHLAILNFPN EYQHQDPSSA MSFASSSSFS TANPVNDGHE VSSTGGQEVI  120
EFEYLDNKLL EELLGTNDPS RQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-29161295114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11028KKQEKGRGENAYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025996.11e-104PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9H8L01e-100B9H8L0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24450.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]