PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017749.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 185aa    MW: 20967.5 Da    PI: 4.7981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017749.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023355123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  CCG017749.1 33 YECVFCKRGFTTAQALGGHMNIH 55
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-63159No hitNo description
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESSNQHDED SKSSSDEEIT DRSYQDTGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
KSRPSSVPSF SSKVDEDFPS FRGYPPLQSY PPHYPTTHEV HTNYQTFFPL SSTWGMGSPY  120
AQQHNGDFYA QTPQHLYPFG EDIRRGSLSQ QIDPSHVDDN TKEKIEDGSE ADDDLDLELR  180
LGHDP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2083750.0AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026015.11e-136PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2K2AKM01e-122A0A2K2AKM0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24290.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-13C2H2 family protein