PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017750.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 196aa MW: 22455.5 Da PI: 9.2345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017750.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F + L H+++H CCG017750.1 38 YSCNFCKRQFISAQALGGHMNVH 60 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.46E-7	35	64	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-4	36	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MVKKYPQGSS TVKDKWEKNN AIFQGEHSSV FSWPQRNYSC NFCKRQFISA QALGGHMNVH 60 RRDRAKLRQL PSWFFKCPKY PTSNPNPDHL LSSSSKFLPY PDDHTHDHSP YLSSFSSPSC 120 REKKSIVESN ESKELTKKKS NAGAVFGVGE LKKNFAQECD QLEVLRRSET INLDMKMGCE 180 DPKEVLDLEL RLGLLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026016.1	1e-146	PREDICTED: transcriptional regulator SUPERMAN
TrEMBL	A0A2K2AKL5	1e-119	A0A2K2AKL5_POPTR; Uncharacterized protein
STRING	POPTR_0005s24280.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2843	31	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	2e-25	zinc finger protein 11