PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017801.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 474aa MW: 52065.3 Da PI: 8.8666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017801.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG017801.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12.3	0.00053	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CCG017801.1 156 WKCEKCSKIYAVQSDWKAHSKTC 178 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.63E-6	79	102	No hit	No description
Pfam	PF12171	7.5E-5	80	102	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	80	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-4	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.63E-6	151	176	No hit	No description
SMART	SM00355	170	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQRTI KKKRNLPGNP 60 DPDAEVIALS PKTLLTTNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKEIKKKA 120 YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT 180 REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSAHQLI ISQNPNAHAL LLQNPLQTHH 240 PHSLFSTPAH HQISFTSPWD PPHHQNPCSN NPQNPVHIKP ETTGHFQISA SLLQEPPLAM 300 PSHKGLLAPT FQSLSNAATS QAPSHHLSAT ALLQKAASVG ATQTSVGHSH MTQLDMGELG 360 SAGQVHVDSV SHVSQGPSYN LNSLATWQKS DRLTRDFLGL TAPECGDHHG HAASNANGSG 420 GSVNVSMNVR EILTYTGGVG FHQQQYNERD HSLLKPHGGF GFAQPSASEA WGDC

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQRTI KKKRNLPGNP  60
DPDAEVIALS PKTLLTTNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKEIKKKA  120
YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSAHQLI ISQNPNAHAL LLQNPLQTHH  240
PHSLFSTPAH HQISFTSPWD PPHHQNPCSN NPQNPVHIKP ETTGHFQISA SLLQEPPLAM  300
PSHKGLLAPT FQSLSNAATS QAPSHHLSAT ALLQKAASVG ATQTSVGHSH MTQLDMGELG  360
SAGQVHVDSV SHVSQGPSYN LNSLATWQKS DRLTRDFLGL TAPECGDHHG HAASNANGSG  420
GSVNVSMNVR EILTYTGGVG FHQQQYNERD HSLLKPHGGF GFAQPSASEA WGDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	152	216	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-35	152	216	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461724	1e-119	AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026098.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	O22759	1e-131	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	B9GSI6	0.0	B9GSI6_POPTR; Uncharacterized protein
STRING	POPTR_0002s04880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-125	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]