PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017928.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18495.9 Da    PI: 8.6909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017928.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.6e-16957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien+  r+vtfskRr+g++KKA+ L+   ++++a++ +s +g+l+++
  CCG017928.1  9 KKIENEDYRKVTFSKRRAGLIKKAKFLCSGANTQIAIVSYSLSGRLFTF 57
                 68**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.6161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20281IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-13323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTRRKIEIKK IENEDYRKVT FSKRRAGLIK KAKFLCSGAN TQIAIVSYSL SGRLFTFGNP  60
SVDSVVDQFL DNYTTDSCRS SSNESPHVIT HGPSPPSSGV VDGKEGRPSW WALPVEDMDL  120
DMDVDGLRQY KASLEILKSN VASRLKEMDE RASLTRDFVG FLDAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026339.11e-120PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2K2BEB91e-102A0A2K2BEB9_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2316234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61