PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018044.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 358aa    MW: 39110.8 Da    PI: 6.5077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018044.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30173231259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  CCG018044.1 173 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 231
                  79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30163233IPR003657WRKY domain
PROSITE profilePS5081135.049167233IPR003657WRKY domain
SuperFamilySSF1182904.71E-26170233IPR003657WRKY domain
SMARTSM007741.0E-36172232IPR003657WRKY domain
PfamPF031062.3E-25174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEDIDWDLHA VVRGCTTSPS ASTTATATTT INSNSNSNGN GTSSGYRSDY YPQYSCFSGF  60
GSEQGGHLFS HPDPFETRNV IGELDELYKP FFPKTQPLLY SPQACTPISS FSSFVSFNKD  120
LQTQPKQQQK KSQPKRSHAG SVTSSGNSHT PRSKRRKNQL KKVCQVPAEA LSSDVWAWRK  180
YGQKPIKGSP YPRGYYRCSS SKGCLARKQV ERNRSDPGMF IVTYTAEHNH PAPTHRNSLA  240
GSTRQKTSTP QTGTSDDSNK PSSPAQPTCS SPATSLEDEL LVQSTTDTEL SREEKDITED  300
DDEDELAGFS EIAVGDDFFA GLEEFVVPAT GFFSDHFPAS FGLPWHPNSN AATAAGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-22157234280Disease resistance protein RRS1
5w3x_D4e-22157234280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015965.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A3S9LKD60.0A0A3S9LKD6_POPTO; WRKY family transcription factor 22
STRINGPOPTR_0002s16590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-79WRKY family protein