PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018118.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 176aa MW: 19274.6 Da PI: 6.7902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018118.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.7	5.1e-31	14	94	5	82
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 ++ +++h+kv+gRdRR+Rl+++caar+F+L++eLG ++d++tieWLl+ a+p i++ tg + + + ++++++++ CCG018118.1 14 PKPRKDRHAKVNGRDRRIRLPVNCAARVFQLTQELGNKTDGETIEWLLRVAEPTIIAVTGKGIGTTNTIrgyAQAARVNTK 94 5788*********************************************************55555444332222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.7E-28	17	103	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.579	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MNKASSSKTK VTDPKPRKDR HAKVNGRDRR IRLPVNCAAR VFQLTQELGN KTDGETIEWL 60 LRVAEPTIIA VTGKGIGTTN TIRGYAQAAR VNTKSVSYSD IHPSVSTGLL SPLTDPSEPR 120 SMEPIRTQGL ISTNCEVSAD EPLSFPSEFG NLETNFDMEF PVNGMFPSVS GNDHEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999530.1	1e-129	PREDICTED: transcription factor TCP22-like
TrEMBL	A0A2K1Z0T1	1e-114	A0A2K1Z0T1_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-29	TCP family protein