PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018169.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 463aa    MW: 52399.2 Da    PI: 5.361
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018169.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.7e-31251305155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt+eLH+ Fv+av++LGG+++AtPk+il +m+vkgL+++hvkSHLQkYRl
  CCG018169.1 251 KQRIRWTTELHDLFVDAVKSLGGPDVATPKSILGIMNVKGLSIYHVKSHLQKYRL 305
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF092297.2E-51078IPR015310Activator of Hsp90 ATPase, N-terminal
SuperFamilySSF466893.05E-17248307IPR009057Homeodomain-like
PROSITE profilePS5129413.869248308IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-29249306IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24251306IPR006447Myb domain, plants
PfamPF002492.8E-8255304IPR001005SANT/Myb domain
PfamPF143791.9E-15344388IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001671Molecular FunctionATPase activator activity
GO:0003677Molecular FunctionDNA binding
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSMGLGEWIV KEEKRMVKGH LDFPEFSFGE LDDLQMQVQL SDEKDLSRQD MLQISQDLKL  60
FLQPVREKLL QFEQELKDRE EKEAGELHWW ALLVFVEYMQ EDRSHHTKYT TLFLFLNAWQ  120
LGSSQGDFLL SHGLFLAQFE NSLFLGGQDL ITEPEKENLM GVLDECSGGS FTGSHCTKES  180
LTSTEKLVLQ YLSKELEIPV DDVSQNSTLN EAQRVSSIPI TELNHYANHR SSAAQMDDSV  240
NRLPEAATPQ KQRIRWTTEL HDLFVDAVKS LGGPDVATPK SILGIMNVKG LSIYHVKSHL  300
QKYRLAKKFP ETNHDKSTSA VVENKAASSN SDNDALVIES NRDVQVTEAL RTQIEIQKLL  360
HEQLKAQKEL QIRIEQNEKF LRELMEQKAI SIHEPSSFAV PVSEPKLLPH SPSADVSSPG  420
QAAVNSDCFL FQPSNHKASD AVVSEKAKCP KRDRGQKEHP ILL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-20251307258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2228571e-101CU222857.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017557.10.0PREDICTED: uncharacterized protein LOC105120873
RefseqXP_011017558.10.0PREDICTED: uncharacterized protein LOC105120873
TrEMBLU5FJJ40.0U5FJJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s14830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-51G2-like family protein