PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018236.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 215aa    MW: 24512 Da    PI: 9.0834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018236.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-142670655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    Er+RR+++N+++  Lre +P  +      Kl+Ka+i + A++YI++Lq
  CCG018236.2 26 TVSERNRRKKLNDKLYALREAVPRiS------KLDKASIIKDAIDYIQDLQ 70
                 568*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8852069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-172386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-112373No hitNo description
PfamPF000101.9E-112670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-152675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-182688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNQTSCQIYD SSSPDGAASA LASRNTVSER NRRKKLNDKL YALREAVPRI SKLDKASIIK  60
DAIDYIQDLQ KQETRLQAEI MELESERSEK DKDYEFERGL PVFLTSKKTR YDQISDQREP  120
RSNPIEVHQL RVSAIGERTL FVSLTCSKAR EAMIRICEVF ESLKLKIITA SVTTVSGMVK  180
KTVLIEADVE ERDHLKSRIE RAIKALSGPY NPQSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12332RNTVSERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445130.0EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017677.11e-156PREDICTED: transcription factor bHLH35-like isoform X1
SwissprotQ2HIV99e-64BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3N7G7Q01e-140A0A3N7G7Q0_POPTR; Uncharacterized protein
TrEMBLA9P8Q11e-140A9P8Q1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13840.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-66bHLH family protein