PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018237.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 244aa    MW: 28066.7 Da    PI: 5.0245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018237.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-155499555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 +   Er+RR+++N+++ eLr+ +Pk +      Kl+Ka+i + A++YI++Lq
  CCG018237.1 54 NTVSERNRRKKLNDKLLELRQAVPKiS------KLDKASIIKDAIDYIQDLQ 99
                 5678*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9994998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-1751115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-1252102No hitNo description
PfamPF000109.4E-135499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1755117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.788170244IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MESFEDISEY QKYWEMTSMF LNDELKSWAM DQASSQYYDS SSPDEAASAV ASKNTVSERN  60
RRKKLNDKLL ELRQAVPKIS KLDKASIIKD AIDYIQDLQE QETRLQAEIM ELESERSEKD  120
KGYEFERELP VLSTSKKTRY DHISDHREPR SDPIEVHQLR VSSMGEKTLF VSLTCSQARE  180
AMVKICEVFE SLKLKIITAS VTSVSGIVKQ TILIEADVEE RDHLKSRIER AIKALSGPYN  240
PQSM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445130.0EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017676.11e-179PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV98e-68BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN641e-171B9IN64_POPTR; BHLH family protein
STRINGPOPTR_0018s13830.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-64bHLH family protein