PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018299.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 188aa MW: 21216 Da PI: 8.0843

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018299.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	205.5	2e-63	9	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 eq+Cy+ CnfCn +lavsvP + l+ vvtvrCGhCt+llsvn+a a q l+ ++h++ +++ ++ + + + ++ ++ st ++++++ CCG018299.1 9 PHEQLCYIPCNFCNIVLAVSVPCSNLYDVVTVRCGHCTNLLSVNMAAAFQSLSWQDHVQ--ASNHISHDYRIDMGSSSKF---INKISTRTPATNI-- 99 579***************************************************944..4456666655543332222...2222333333222.. PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl CCG018299.1 100 ATQE-----RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIQFGL 161 2222.....2479**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.9E-70	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	7.33E-8	104	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSSCVDVVPH EQLCYIPCNF CNIVLAVSVP CSNLYDVVTV RCGHCTNLLS VNMAAAFQSL 60 SWQDHVQASN HISHDYRIDM GSSSKFINKI STRTPATNIA TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPEISH REAFSTAAKN WAHFPHIQFG LMLETSNQTK LDDGSDKHLM 180 SRSTLLNN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	3e-57	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667745	3e-57	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	3e-57	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017779.1	1e-141	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	7e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9IMX9	1e-133	B9IMX9_POPTR; Uncharacterized protein
STRING	POPTR_0018s12990.1	1e-134	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-83	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]