PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018317.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 229aa    MW: 26166.3 Da    PI: 7.5027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018317.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd++l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl
      CCG018317.1 12 KGLWKPEEDLILKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNYL 59
                     678*******************************************97 PP
2Myb_DNA-binding51.32.7e-1665110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
      CCG018317.1  65 RGGMSQEEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22562IPR009057Homeodomain-like
PROSITE profilePS5129417.873759IPR017930Myb domain
SuperFamilySSF466891.76E-289106IPR009057Homeodomain-like
SMARTSM007171.7E-121161IPR001005SANT/Myb domain
PfamPF002499.4E-141259IPR001005SANT/Myb domain
CDDcd001677.42E-101559No hitNo description
PROSITE profilePS5129424.74760114IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2463114IPR009057Homeodomain-like
SMARTSM007175.0E-1664112IPR001005SANT/Myb domain
PfamPF002491.6E-1465110IPR001005SANT/Myb domain
CDDcd001671.76E-1168110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESKEAKPKV KKGLWKPEED LILKTYVETH GEGNWSTVSK KSGLMRGGKS CRLRWKNYLR  60
PNIKRGGMSQ EEEDMIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRLPSGKRK  120
GTDSNPDQDD NNTKENKSKR LRALGDSQPT GNTSPIGSTE ELEGKDQEKE ERSAVSDLWA  180
QDAQSMMNYY IESPMVPDNN GTFVFDDEPF LAYWDSFVLF ESVGCGGDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-24811423128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017815.11e-170PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF78e-66MYB82_ARATH; Transcription factor MYB82
TrEMBLB9IMW01e-164B9IMW0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12780.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-66myb domain protein 82