PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018345.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 293aa    MW: 32121.8 Da    PI: 9.1971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018345.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026107129123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C + Fs++  L  H++ H
  CCG018345.1 107 FSCSFCRRKFSTSQALGGHQNAH 129
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-4102133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.93E-6103134No hitNo description
PROSITE profilePS5015711.552107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDSIVPEWCP SKASSVSAAA FGGEAHKDCG DHDQNMKMKE RVVRGSEPPP FPKSSACGLI  60
DLKPHSDDSI RGSKLEFNLF SPINVGSSHA IESMDEASKQ GTEPRVFSCS FCRRKFSTSQ  120
ALGGHQNAHK QERALAKKRE GSDVGATPGQ FPYNPYSSLP TNQYYGSFNR LVGVRMDSLI  180
HKKQPYPWNS FGGYRYGHGG WSRQVMVSTQ PSVDRLRAES SKAFSGVPFG KFSSSPSSSR  240
FEDHNGLFRN SCASPSSNIA FNIPPSTDHL QRPNRPPKSD LTDESGLDLS LKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017861.10.0PREDICTED: zinc finger protein 3-like
TrEMBLU7E1E10.0U7E1E1_POPTR; Zinc finger family protein
STRINGPOPTR_0025s00660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-22zinc finger protein 3