PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018346.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 294aa MW: 31936.2 Da PI: 8.8711

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018346.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H CCG018346.1 109 FSCNFCKREFSTSQALGGHQNAH 131 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.9E-4	104	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.88E-6	105	136	No hit	No description
PROSITE profile	PS50157	11.531	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MESSGTEKSP SEGSSISATS EGTPHGDGGD LDQTKMDNTK MKEKDARGGS EPALLPESSA 60 RVLLDLKLCR DNSIRGSKQF NLFSPTSVGS SHAKESTDET SRQTEPRVFS CNFCKREFST 120 SQALGGHQNA HKQERALAKR RREMDASALG HLPYYPYSSL STNPYYGSLN RALGVRMDSF 180 IHKTSPYSWT TPGGHRYGAH SGWPRQTLLN TQPSIDRLRT ESLNAFCGGF GISTSSSSPR 240 FDDQGTVRSS FGASPSSNNI AAIRKPPSTD HIQQINPPKS DKADESGLDL SLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017863.1	0.0	PREDICTED: zinc finger protein 7-like
TrEMBL	U7E2Y1	0.0	U7E2Y1_POPTR; Zinc finger family protein
STRING	POPTR_0025s00650.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	4e-23	zinc finger protein 3