PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018612.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 224aa MW: 24082 Da PI: 9.4669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018612.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	194	217	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ CCG018612.1 194 SIAERVRRTRISDRIRKLQELVPN 217 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.362	188	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-6	191	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.58E-4	192	222	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-5	193	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MHQAPAASGN TSGGGGGGGG GGGLPRLRSA PATWLLALLE EEEEDPLKQN QNLTQLLTSN 60 APSSRNSAPF NASSAAVEPG LFETGGVFRR QNSSPADFIG NSGIGSDQGY FSNYGISSNY 120 EYMPPNMEVS PSGKRAREIE LRNPSARYPP PLKGAQTGPL RASSLIEMEM DKLLEESVPC 180 KIRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK VTPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001080.1	1e-160	PREDICTED: transcription factor bHLH80-like isoform X1
Swissprot	Q9C8P8	1e-62	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A2K1Y413	1e-124	A0A2K1Y413_POPTR; Uncharacterized protein
STRING	POPTR_0019s10900.1	1e-117	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9132	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	7e-48	bHLH family protein