PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018613.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18502.4 Da    PI: 7.5073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018613.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.13.6e-161050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                  i+n+s r+vtf kR++g+lKK  EL +LC++ ++ iifs+
  CCG018613.1 10 LISNESVRKVTFRKRKAGLLKKLDELATLCGVIACAIIFSP 50
                 59**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-20169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.563149IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-23160IPR002100Transcription factor, MADS-box
CDDcd002667.77E-23285No hitNo description
PRINTSPR004041.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVKHEL ISNESVRKVT FRKRKAGLLK KLDELATLCG VIACAIIFSP YDDQPEIWPS  60
PAEALYVFEE LKRLPSRKPG KYMVDQEAFL STNVSKLTQQ LEKRRRKNLG LELELMMAGC  120
TEGMDLHDLK HIKNPSESIQ FLEEMIASVT SEIEHAENEN SA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKHELISNESVRKVTFRKRK
2101107EKRRRKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001082.11e-118PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_011016517.11e-118PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLB9MWC81e-109B9MWC8_POPTR; M-type family protein
STRINGPOPTR_0013s11210.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-35AGAMOUS-like 87